dishevelled.org variation-cytoscape3-app

Checkstyle Results

The following document contains the results of Checkstyle.

Summary

Files	Infos	Warnings	Errors
45	0	0	264

Files

Files	I	W	E
src/main/java/org/dishevelled/variation/cytoscape3/internal/AddVariationsTask.java	0	0	1
src/main/java/org/dishevelled/variation/cytoscape3/internal/AddVariationsTaskFactory.java	0	0	2
src/main/java/org/dishevelled/variation/cytoscape3/internal/AnnotateVariationConsequencesTask.java	0	0	8
src/main/java/org/dishevelled/variation/cytoscape3/internal/AnnotateVariationConsequencesTaskFactory.java	0	0	3
src/main/java/org/dishevelled/variation/cytoscape3/internal/ConfigView.java	0	0	49
src/main/java/org/dishevelled/variation/cytoscape3/internal/CyActivator.java	0	0	3
src/main/java/org/dishevelled/variation/cytoscape3/internal/FeatureView.java	0	0	9
src/main/java/org/dishevelled/variation/cytoscape3/internal/PredictVariationConsequencesTask.java	0	0	8
src/main/java/org/dishevelled/variation/cytoscape3/internal/PredictVariationConsequencesTaskFactory.java	0	0	3
src/main/java/org/dishevelled/variation/cytoscape3/internal/RetrieveFeaturesTask.java	0	0	15
src/main/java/org/dishevelled/variation/cytoscape3/internal/RetrieveFeaturesTaskFactory.java	0	0	1
src/main/java/org/dishevelled/variation/cytoscape3/internal/TableRowColorMapping.java	0	0	82
src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationAction.java	0	0	8
src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationApp.java	0	0	12
src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationConsequenceView.java	0	0	13
src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationModel.java	0	0	9
src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationUtils.java	0	0	7
src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationView.java	0	0	9
src/main/java/org/dishevelled/variation/cytoscape3/internal/VisualMappingView.java	0	0	21
target/generated-classes/cobertura/cobertura.properties	0	0	1

Details

src/main/java/org/dishevelled/variation/cytoscape3/internal/AddVariationsTask.java

Violation	Message	Line
	Line is longer than 120 characters (found 122).	94

src/main/java/org/dishevelled/variation/cytoscape3/internal/AddVariationsTaskFactory.java

Violation	Message	Line
	Line is longer than 120 characters (found 131).	62
	Line is longer than 120 characters (found 124).	63

src/main/java/org/dishevelled/variation/cytoscape3/internal/AnnotateVariationConsequencesTask.java

Violation	Message	Line
	'0.1d' is a magic number.	95
	Line is longer than 120 characters (found 141).	101
	Line is longer than 120 characters (found 137).	103
	Line is longer than 120 characters (found 138).	104
	Line is longer than 120 characters (found 153).	105
	'0.1d' is a magic number.	110
	'0.8d' is a magic number.	110
	'0.9d' is a magic number.	125

src/main/java/org/dishevelled/variation/cytoscape3/internal/AnnotateVariationConsequencesTaskFactory.java

Violation	Message	Line
	Line is longer than 120 characters (found 131).	61
	Line is longer than 120 characters (found 124).	62
	Line is longer than 120 characters (found 183).	63

src/main/java/org/dishevelled/variation/cytoscape3/internal/ConfigView.java

Violation	Message	Line
	Unused import - javax.swing.JFileChooser.	56
	'{' is followed by whitespace.	352
	Line is longer than 120 characters (found 190).	355
	'{' is followed by whitespace.	355
	Line is longer than 120 characters (found 209).	358
	'{' is followed by whitespace.	358
	Line is longer than 120 characters (found 142).	361
	'{' is followed by whitespace.	361
	'20' is a magic number.	379
	'20' is a magic number.	384
	'32' is a magic number.	392
	'32' is a magic number.	395
	'20' is a magic number.	399
	'32' is a magic number.	403
	'48' is a magic number.	410
	'48' is a magic number.	413
	'48' is a magic number.	416
	'12' is a magic number.	452
	'12' is a magic number.	452
	'48' is a magic number.	452
	Missing a Javadoc comment.	457
	'12' is a magic number.	464
	'12' is a magic number.	469
	'12' is a magic number.	477
	'12' is a magic number.	495
	'4' is a magic number.	514
	Line is longer than 120 characters (found 123).	520
	'4' is a magic number.	541
	Line is longer than 120 characters (found 125).	547
	'4' is a magic number.	568
	Line is longer than 120 characters (found 131).	574
	'48' is a magic number.	613
	'4' is a magic number.	630
	Line is longer than 120 characters (found 148).	674
	Line is longer than 120 characters (found 121).	709
	'22' is a magic number.	709
	'3000000000L' is a magic number.	709
	Line is longer than 120 characters (found 172).	713
	Line is longer than 120 characters (found 177).	722
	Line is longer than 120 characters (found 130).	726
	Line is longer than 120 characters (found 122).	730
	Line is longer than 120 characters (found 151).	745
	Line is longer than 120 characters (found 175).	752
	Line is longer than 120 characters (found 201).	765
	Line is longer than 120 characters (found 144).	769
	Line is longer than 120 characters (found 142).	773
	Line is longer than 120 characters (found 139).	777
	Line is longer than 120 characters (found 221).	786
	Line is longer than 120 characters (found 128).	790

src/main/java/org/dishevelled/variation/cytoscape3/internal/CyActivator.java

Violation	Message	Line
	Line is longer than 120 characters (found 155).	55
	Line is longer than 120 characters (found 151).	56
	Line is longer than 120 characters (found 157).	57

src/main/java/org/dishevelled/variation/cytoscape3/internal/FeatureView.java

Violation	Message	Line
	Line is longer than 120 characters (found 128).	77
	'{' is followed by whitespace.	77
	Line is longer than 120 characters (found 127).	80
	'{' is followed by whitespace.	80
	Line is longer than 120 characters (found 131).	83
	'12' is a magic number.	108
	'12' is a magic number.	110
	'12' is a magic number.	123
	'8' is a magic number.	158

src/main/java/org/dishevelled/variation/cytoscape3/internal/PredictVariationConsequencesTask.java

Violation	Message	Line
	'0.1d' is a magic number.	95
	Line is longer than 120 characters (found 125).	103
	Line is longer than 120 characters (found 155).	104
	Line is longer than 120 characters (found 166).	105
	'0.1d' is a magic number.	110
	'0.8d' is a magic number.	110
	'0.9d' is a magic number.	125
	'0.1d' is a magic number.	125

src/main/java/org/dishevelled/variation/cytoscape3/internal/PredictVariationConsequencesTaskFactory.java

Violation	Message	Line
	Line is longer than 120 characters (found 131).	60
	Line is longer than 120 characters (found 124).	61
	Line is longer than 120 characters (found 180).	62

src/main/java/org/dishevelled/variation/cytoscape3/internal/RetrieveFeaturesTask.java

Violation	Message	Line
	Line is longer than 120 characters (found 132).	83
	Line is longer than 120 characters (found 160).	84
	Line is longer than 120 characters (found 152).	85
	Line is longer than 120 characters (found 121).	97
	Line is longer than 120 characters (found 128).	101
	Line has trailing spaces.	103
	Line has trailing spaces.	105
	Line is longer than 120 characters (found 147).	111
	Line is longer than 120 characters (found 133).	112
	Line is longer than 120 characters (found 135).	113
	Line is longer than 120 characters (found 130).	114
	Line is longer than 120 characters (found 167).	122
	Line is longer than 120 characters (found 139).	125
	Line is longer than 120 characters (found 137).	130
	Line is longer than 120 characters (found 152).	131

src/main/java/org/dishevelled/variation/cytoscape3/internal/RetrieveFeaturesTaskFactory.java

Violation	Message	Line
	Line is longer than 120 characters (found 131).	61

src/main/java/org/dishevelled/variation/cytoscape3/internal/TableRowColorMapping.java

Violation	Message	Line
	'256' is a magic number.	60
	'255' is a magic number.	65
	'255' is a magic number.	66
	'255' is a magic number.	67
	'255' is a magic number.	69
	'127' is a magic number.	69
	'80' is a magic number.	69
	'255' is a magic number.	70
	'127' is a magic number.	70
	'80' is a magic number.	70
	'255' is a magic number.	71
	'127' is a magic number.	71
	'80' is a magic number.	71
	'255' is a magic number.	73
	'105' is a magic number.	73
	'180' is a magic number.	73
	'255' is a magic number.	74
	'105' is a magic number.	74
	'180' is a magic number.	74
	'255' is a magic number.	75
	'105' is a magic number.	75
	'180' is a magic number.	75
	'255' is a magic number.	76
	'105' is a magic number.	76
	'180' is a magic number.	76
	'255' is a magic number.	78
	'215' is a magic number.	78
	'255' is a magic number.	79
	'215' is a magic number.	79
	'255' is a magic number.	81
	'255' is a magic number.	81
	'118' is a magic number.	83
	'238' is a magic number.	83
	'118' is a magic number.	84
	'238' is a magic number.	84
	'69' is a magic number.	86
	'139' is a magic number.	86
	'69' is a magic number.	87
	'139' is a magic number.	87
	'122' is a magic number.	89
	'197' is a magic number.	89
	'205' is a magic number.	89
	'122' is a magic number.	90
	'197' is a magic number.	90
	'205' is a magic number.	90
	'89' is a magic number.	92
	'156' is a magic number.	92
	'255' is a magic number.	94
	'69' is a magic number.	94
	'50' is a magic number.	96
	'205' is a magic number.	96
	'50' is a magic number.	96
	'50' is a magic number.	97
	'205' is a magic number.	97
	'50' is a magic number.	97
	'162' is a magic number.	99
	'181' is a magic number.	99
	'205' is a magic number.	99
	'162' is a magic number.	100
	'181' is a magic number.	100
	'205' is a magic number.	100
	'165' is a magic number.	102
	'42' is a magic number.	102
	'42' is a magic number.	102
	'165' is a magic number.	103
	'42' is a magic number.	103
	'42' is a magic number.	103
	'165' is a magic number.	104
	'42' is a magic number.	104
	'42' is a magic number.	104
	'165' is a magic number.	105
	'42' is a magic number.	105
	'42' is a magic number.	105
	'165' is a magic number.	106
	'42' is a magic number.	106
	'42' is a magic number.	106
	'165' is a magic number.	107
	'42' is a magic number.	107
	'42' is a magic number.	107
	'99' is a magic number.	109
	'99' is a magic number.	109
	'99' is a magic number.	109

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationAction.java

Violation	Message	Line
	'12' is a magic number.	144
	'12' is a magic number.	144
	'12' is a magic number.	144
	'12' is a magic number.	144
	'200' is a magic number.	186
	'200' is a magic number.	186
	'920' is a magic number.	186
	'740' is a magic number.	186

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationApp.java

Violation	Message	Line
	Line is longer than 120 characters (found 150).	86
	Line is longer than 120 characters (found 140).	89
	Line is longer than 120 characters (found 150).	92
	Line is longer than 120 characters (found 148).	95
	Line is longer than 120 characters (found 159).	107
	Line is longer than 120 characters (found 279).	130
	Line is longer than 120 characters (found 521).	153
	Line is longer than 120 characters (found 128).	164
	Line is longer than 120 characters (found 519).	176
	Line is longer than 120 characters (found 125).	187
	Line is longer than 120 characters (found 156).	221
	Line is longer than 120 characters (found 126).	342

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationConsequenceView.java

Violation	Message	Line
	Line is longer than 120 characters (found 181).	88
	'{' is followed by whitespace.	88
	Line is longer than 120 characters (found 147).	91
	'{' is followed by whitespace.	91
	Line is longer than 120 characters (found 157).	94
	'12' is a magic number.	118
	'12' is a magic number.	120
	'12' is a magic number.	133
	Line is longer than 120 characters (found 189).	171
	Line is longer than 120 characters (found 133).	173
	Line is longer than 120 characters (found 125).	176
	'8' is a magic number.	176
	'8' is a magic number.	193

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationModel.java

Violation	Message	Line
	Line is longer than 120 characters (found 122).	242
	Line is longer than 120 characters (found 146).	410
	Line is longer than 120 characters (found 135).	424
	Line is longer than 120 characters (found 139).	430
	Line is longer than 120 characters (found 132).	432
	Line is longer than 120 characters (found 176).	434
	Line is longer than 120 characters (found 161).	617
	Line is longer than 120 characters (found 121).	643
	Line is longer than 120 characters (found 124).	664

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationUtils.java

Violation	Message	Line
	Line is longer than 120 characters (found 124).	102
	Line is longer than 120 characters (found 143).	117
	Line is longer than 120 characters (found 136).	212
	Line is longer than 120 characters (found 123).	225
	Missing a Javadoc comment.	296
	Missing a Javadoc comment.	301
	Line has trailing spaces.	342

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationView.java

Violation	Message	Line
	Line is longer than 120 characters (found 158).	83
	'{' is followed by whitespace.	83
	Line is longer than 120 characters (found 132).	86
	'{' is followed by whitespace.	86
	Line is longer than 120 characters (found 135).	89
	'12' is a magic number.	113
	'12' is a magic number.	115
	'12' is a magic number.	128
	'8' is a magic number.	170

src/main/java/org/dishevelled/variation/cytoscape3/internal/VisualMappingView.java

Violation	Message	Line
	'12' is a magic number.	158
	'12' is a magic number.	158
	'48' is a magic number.	158
	Line is longer than 120 characters (found 215).	237
	'30.0d' is a magic number.	239
	'90.0d' is a magic number.	240
	Line is longer than 120 characters (found 220).	269
	'239' is a magic number.	272
	'243' is a magic number.	272
	'255' is a magic number.	272
	'189' is a magic number.	273
	'215' is a magic number.	273
	'231' is a magic number.	273
	'107' is a magic number.	274
	'174' is a magic number.	274
	'214' is a magic number.	274
	'33' is a magic number.	275
	'113' is a magic number.	275
	'181' is a magic number.	275
	'3' is a magic number.	278
	'3' is a magic number.	279

target/generated-classes/cobertura/cobertura.properties

Violation	Message	Line
	Missing a header - not enough lines in file.	1

DVL1 dishevelled.org

Checkstyle Results

Summary

Files

Details

src/main/java/org/dishevelled/variation/cytoscape3/internal/AddVariationsTask.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/AddVariationsTaskFactory.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/AnnotateVariationConsequencesTask.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/AnnotateVariationConsequencesTaskFactory.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/ConfigView.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/CyActivator.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/FeatureView.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/PredictVariationConsequencesTask.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/PredictVariationConsequencesTaskFactory.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/RetrieveFeaturesTask.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/RetrieveFeaturesTaskFactory.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/TableRowColorMapping.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationAction.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationApp.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationConsequenceView.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationModel.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationUtils.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/VariationView.java

src/main/java/org/dishevelled/variation/cytoscape3/internal/VisualMappingView.java

target/generated-classes/cobertura/cobertura.properties