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package org.dishevelled.venn.cytoscape; |
| 25 | |
|
| 26 | |
import java.awt.BorderLayout; |
| 27 | |
import java.awt.Color; |
| 28 | |
import java.awt.Cursor; |
| 29 | |
import java.awt.Dialog; |
| 30 | |
import java.awt.FileDialog; |
| 31 | |
import java.awt.Image; |
| 32 | |
import java.awt.Paint; |
| 33 | |
import java.awt.Toolkit; |
| 34 | |
|
| 35 | |
import java.awt.event.ActionEvent; |
| 36 | |
import java.awt.event.InputEvent; |
| 37 | |
import java.awt.event.KeyAdapter; |
| 38 | |
import java.awt.event.KeyEvent; |
| 39 | |
|
| 40 | |
import java.awt.geom.Point2D; |
| 41 | |
|
| 42 | |
import java.awt.image.RenderedImage; |
| 43 | |
|
| 44 | |
import java.io.File; |
| 45 | |
import java.io.FileWriter; |
| 46 | |
import java.io.IOException; |
| 47 | |
|
| 48 | |
import java.util.Iterator; |
| 49 | |
import java.util.Set; |
| 50 | |
|
| 51 | |
import javax.imageio.ImageIO; |
| 52 | |
|
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import javax.swing.AbstractAction; |
| 54 | |
import javax.swing.AbstractButton; |
| 55 | |
import javax.swing.Action; |
| 56 | |
import javax.swing.InputMap; |
| 57 | |
import javax.swing.KeyStroke; |
| 58 | |
import javax.swing.JCheckBoxMenuItem; |
| 59 | |
import javax.swing.JComponent; |
| 60 | |
import javax.swing.JMenuItem; |
| 61 | |
import javax.swing.JPanel; |
| 62 | |
import javax.swing.JPopupMenu; |
| 63 | |
|
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import static javax.swing.SwingUtilities.windowForComponent; |
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|
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import org.apache.batik.dom.GenericDOMImplementation; |
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|
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import org.apache.batik.svggen.SVGGraphics2D; |
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|
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import cytoscape.CyNode; |
| 71 | |
import cytoscape.CyNetwork; |
| 72 | |
import cytoscape.Cytoscape; |
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|
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import org.dishevelled.identify.ContextMenuListener; |
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|
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import org.dishevelled.piccolo.venn.AbstractVennNode; |
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import org.dishevelled.piccolo.venn.BinaryVennNode; |
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import org.dishevelled.piccolo.venn.TernaryVennNode; |
| 79 | |
import org.dishevelled.piccolo.venn.QuaternaryVennNode; |
| 80 | |
import org.dishevelled.piccolo.venn.VennNode; |
| 81 | |
|
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import org.piccolo2d.PCamera; |
| 83 | |
import org.piccolo2d.PCanvas; |
| 84 | |
import org.piccolo2d.PNode; |
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|
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import org.piccolo2d.event.PBasicInputEventHandler; |
| 87 | |
import org.piccolo2d.event.PInputEvent; |
| 88 | |
import org.piccolo2d.event.PInputEventFilter; |
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import org.piccolo2d.event.PMouseWheelZoomEventHandler; |
| 90 | |
import org.piccolo2d.event.PPanEventHandler; |
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|
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import org.piccolo2d.util.PPaintContext; |
| 93 | |
import org.piccolo2d.util.PPickPath; |
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|
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import org.w3c.dom.Document; |
| 96 | |
import org.w3c.dom.DOMImplementation; |
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|
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|
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|
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|
| 101 | 0 | final class DiagramView |
| 102 | |
extends JPanel |
| 103 | |
{ |
| 104 | |
|
| 105 | |
private static final String SVG_NS = "http://www.w3.org/2000/svg"; |
| 106 | |
|
| 107 | |
|
| 108 | |
private final PCanvas canvas; |
| 109 | |
|
| 110 | |
|
| 111 | 0 | private final Action exportToPNG = new AbstractAction("Export to PNG...") |
| 112 | 0 | { |
| 113 | |
|
| 114 | |
public void actionPerformed(final ActionEvent event) |
| 115 | |
{ |
| 116 | 0 | exportToPNG(); |
| 117 | 0 | } |
| 118 | |
}; |
| 119 | |
|
| 120 | |
|
| 121 | 0 | private final Action exportToSVG = new AbstractAction("Export to SVG...") |
| 122 | 0 | { |
| 123 | |
|
| 124 | |
public void actionPerformed(final ActionEvent event) |
| 125 | |
{ |
| 126 | 0 | exportToSVG(); |
| 127 | 0 | } |
| 128 | |
}; |
| 129 | |
|
| 130 | |
|
| 131 | 0 | private final Action selectAll = new AbstractAction("Select all") |
| 132 | 0 | { |
| 133 | |
|
| 134 | |
public void actionPerformed(final ActionEvent event) |
| 135 | |
{ |
| 136 | 0 | selectAll(); |
| 137 | 0 | } |
| 138 | |
}; |
| 139 | |
|
| 140 | |
|
| 141 | 0 | private final Action clearSelection = new AbstractAction("Clear selection") |
| 142 | 0 | { |
| 143 | |
|
| 144 | |
public void actionPerformed(final ActionEvent event) |
| 145 | |
{ |
| 146 | 0 | clearSelection(); |
| 147 | 0 | } |
| 148 | |
}; |
| 149 | |
|
| 150 | |
|
| 151 | 0 | private final Action zoomIn = new AbstractAction("Zoom in") |
| 152 | 0 | { |
| 153 | |
|
| 154 | |
public void actionPerformed(final ActionEvent event) |
| 155 | |
{ |
| 156 | 0 | zoomIn(); |
| 157 | 0 | } |
| 158 | |
}; |
| 159 | |
|
| 160 | |
|
| 161 | 0 | private final Action zoomOut = new AbstractAction("Zoom out") |
| 162 | 0 | { |
| 163 | |
|
| 164 | |
public void actionPerformed(final ActionEvent event) |
| 165 | |
{ |
| 166 | 0 | zoomOut(); |
| 167 | 0 | } |
| 168 | |
}; |
| 169 | |
|
| 170 | |
|
| 171 | 0 | private final Action displayLabels = new AbstractAction("Display set labels") |
| 172 | 0 | { |
| 173 | |
|
| 174 | |
public void actionPerformed(final ActionEvent event) |
| 175 | |
{ |
| 176 | 0 | displayLabels(((AbstractButton) event.getSource()).isSelected()); |
| 177 | 0 | } |
| 178 | |
}; |
| 179 | |
|
| 180 | |
|
| 181 | 0 | private final Action displaySizeLabels = new AbstractAction("Display size labels") |
| 182 | 0 | { |
| 183 | |
|
| 184 | |
public void actionPerformed(final ActionEvent event) |
| 185 | |
{ |
| 186 | 0 | displaySizeLabels(((AbstractButton) event.getSource()).isSelected()); |
| 187 | 0 | } |
| 188 | |
}; |
| 189 | |
|
| 190 | |
|
| 191 | 0 | private final Action displaySizes = new AbstractAction("Display sizes in set labels") |
| 192 | 0 | { |
| 193 | |
|
| 194 | |
public void actionPerformed(final ActionEvent event) |
| 195 | |
{ |
| 196 | 0 | displaySizes(((AbstractButton) event.getSource()).isSelected()); |
| 197 | 0 | } |
| 198 | |
}; |
| 199 | |
|
| 200 | |
|
| 201 | 0 | private final Action displaySizesForEmptyAreas = new AbstractAction("Display sizes for empty areas") |
| 202 | 0 | { |
| 203 | |
|
| 204 | |
public void actionPerformed(final ActionEvent event) |
| 205 | |
{ |
| 206 | 0 | displaySizesForEmptyAreas(((AbstractButton) event.getSource()).isSelected()); |
| 207 | 0 | } |
| 208 | |
}; |
| 209 | |
|
| 210 | |
|
| 211 | 0 | private static final Color AREA_COLOR = new Color(0, 0, 0, 0); |
| 212 | |
|
| 213 | |
|
| 214 | 0 | private static final Paint AREA_PRESSED_PAINT = new Color(20, 20, 20, 80); |
| 215 | |
|
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|
| 217 | |
private static final double SCALE_FACTOR = 0.1d; |
| 218 | |
|
| 219 | |
|
| 220 | 0 | private Mode mode = Mode.EDIT; |
| 221 | |
|
| 222 | |
|
| 223 | 0 | private enum Mode |
| 224 | |
{ |
| 225 | |
|
| 226 | 0 | EDIT, |
| 227 | |
|
| 228 | |
|
| 229 | 0 | PAN |
| 230 | |
}; |
| 231 | |
|
| 232 | |
|
| 233 | |
|
| 234 | |
|
| 235 | |
|
| 236 | |
private DiagramView() |
| 237 | 0 | { |
| 238 | 0 | canvas = new PCanvas(); |
| 239 | 0 | canvas.setDefaultRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); |
| 240 | 0 | canvas.setAnimatingRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); |
| 241 | 0 | canvas.setInteractingRenderQuality(PPaintContext.HIGH_QUALITY_RENDERING); |
| 242 | 0 | canvas.removeInputEventListener(canvas.getPanEventHandler()); |
| 243 | 0 | canvas.removeInputEventListener(canvas.getZoomEventHandler()); |
| 244 | 0 | canvas.addKeyListener(new ModeEventHandler()); |
| 245 | 0 | canvas.addInputEventListener(new PanEventHandler()); |
| 246 | 0 | PMouseWheelZoomEventHandler mouseWheelZoomEventHandler = new PMouseWheelZoomEventHandler(); |
| 247 | 0 | mouseWheelZoomEventHandler.zoomAboutCanvasCenter(); |
| 248 | 0 | mouseWheelZoomEventHandler.setScaleFactor(1.0E-02d); |
| 249 | 0 | canvas.addInputEventListener(mouseWheelZoomEventHandler); |
| 250 | |
|
| 251 | 0 | InputMap inputMap = getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW); |
| 252 | 0 | int menuKeyMask = Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(); |
| 253 | 0 | KeyStroke ctrlShiftP = KeyStroke.getKeyStroke(KeyEvent.VK_P, menuKeyMask | InputEvent.SHIFT_DOWN_MASK); |
| 254 | 0 | KeyStroke ctrlShiftS = KeyStroke.getKeyStroke(KeyEvent.VK_S, menuKeyMask | InputEvent.SHIFT_DOWN_MASK); |
| 255 | 0 | KeyStroke ctrlShiftA = KeyStroke.getKeyStroke(KeyEvent.VK_A, menuKeyMask | InputEvent.SHIFT_DOWN_MASK); |
| 256 | 0 | KeyStroke ctrlShiftC = KeyStroke.getKeyStroke(KeyEvent.VK_C, menuKeyMask | InputEvent.SHIFT_DOWN_MASK); |
| 257 | 0 | KeyStroke ctrlShiftPeriod = KeyStroke.getKeyStroke(KeyEvent.VK_COMMA, menuKeyMask | InputEvent.SHIFT_DOWN_MASK); |
| 258 | 0 | KeyStroke ctrlShiftComma = KeyStroke.getKeyStroke(KeyEvent.VK_PERIOD, menuKeyMask | InputEvent.SHIFT_DOWN_MASK); |
| 259 | 0 | inputMap.put(ctrlShiftP, "exportToPNG"); |
| 260 | 0 | inputMap.put(ctrlShiftS, "exportToSVG"); |
| 261 | 0 | inputMap.put(ctrlShiftA, "selectAll"); |
| 262 | 0 | inputMap.put(ctrlShiftC, "clearSelection"); |
| 263 | 0 | inputMap.put(ctrlShiftComma, "zoomIn"); |
| 264 | 0 | inputMap.put(ctrlShiftPeriod, "zoomOut"); |
| 265 | 0 | getActionMap().put("exportToPNG", exportToPNG); |
| 266 | 0 | getActionMap().put("exportToSVG", exportToSVG); |
| 267 | 0 | getActionMap().put("selectAll", selectAll); |
| 268 | 0 | getActionMap().put("clearSelection", clearSelection); |
| 269 | 0 | getActionMap().put("zoomIn", zoomIn); |
| 270 | 0 | getActionMap().put("zoomOut", zoomOut); |
| 271 | |
|
| 272 | 0 | JMenuItem exportToPNGMenuItem = new JMenuItem(exportToPNG); |
| 273 | 0 | exportToPNGMenuItem.setAccelerator(ctrlShiftP); |
| 274 | 0 | JMenuItem exportToSVGMenuItem = new JMenuItem(exportToSVG); |
| 275 | 0 | exportToSVGMenuItem.setAccelerator(ctrlShiftS); |
| 276 | |
|
| 277 | 0 | JCheckBoxMenuItem displayLabelsMenuItem = new JCheckBoxMenuItem(displayLabels); |
| 278 | 0 | displayLabelsMenuItem.setSelected(true); |
| 279 | 0 | JCheckBoxMenuItem displaySizesMenuItem = new JCheckBoxMenuItem(displaySizes); |
| 280 | 0 | displaySizesMenuItem.setSelected(true); |
| 281 | 0 | JCheckBoxMenuItem displaySizeLabelsMenuItem = new JCheckBoxMenuItem(displaySizeLabels); |
| 282 | 0 | displaySizeLabelsMenuItem.setSelected(true); |
| 283 | 0 | JCheckBoxMenuItem displaySizesForEmptyAreasMenuItem = new JCheckBoxMenuItem(displaySizesForEmptyAreas); |
| 284 | 0 | displaySizesForEmptyAreasMenuItem.setSelected(true); |
| 285 | 0 | JMenuItem selectAllMenuItem = new JMenuItem(selectAll); |
| 286 | 0 | selectAllMenuItem.setAccelerator(ctrlShiftA); |
| 287 | 0 | JMenuItem clearSelectionMenuItem = new JMenuItem(clearSelection); |
| 288 | 0 | clearSelectionMenuItem.setAccelerator(ctrlShiftC); |
| 289 | 0 | JMenuItem zoomInMenuItem = new JMenuItem(zoomIn); |
| 290 | 0 | zoomInMenuItem.setAccelerator(ctrlShiftPeriod); |
| 291 | 0 | JMenuItem zoomOutMenuItem = new JMenuItem(zoomOut); |
| 292 | 0 | zoomOutMenuItem.setAccelerator(ctrlShiftComma); |
| 293 | |
|
| 294 | 0 | JPopupMenu contextMenu = new JPopupMenu(); |
| 295 | 0 | contextMenu.add(exportToPNGMenuItem); |
| 296 | 0 | contextMenu.add(exportToSVGMenuItem); |
| 297 | 0 | contextMenu.addSeparator(); |
| 298 | 0 | contextMenu.add(displayLabelsMenuItem); |
| 299 | 0 | contextMenu.add(displaySizesMenuItem); |
| 300 | 0 | contextMenu.add(displaySizeLabelsMenuItem); |
| 301 | 0 | contextMenu.add(displaySizesForEmptyAreasMenuItem); |
| 302 | 0 | contextMenu.addSeparator(); |
| 303 | 0 | contextMenu.add(selectAllMenuItem); |
| 304 | 0 | contextMenu.add(clearSelectionMenuItem); |
| 305 | 0 | contextMenu.addSeparator(); |
| 306 | 0 | contextMenu.add(zoomInMenuItem); |
| 307 | 0 | contextMenu.add(zoomOutMenuItem); |
| 308 | 0 | canvas.addMouseListener(new ContextMenuListener(contextMenu)); |
| 309 | |
|
| 310 | 0 | setLayout(new BorderLayout()); |
| 311 | 0 | add("Center", canvas); |
| 312 | 0 | } |
| 313 | |
|
| 314 | |
|
| 315 | |
|
| 316 | |
|
| 317 | |
|
| 318 | |
|
| 319 | |
DiagramView(final BinaryVennNode<CyNode> binaryVennNode) |
| 320 | |
{ |
| 321 | 0 | this(); |
| 322 | |
|
| 323 | 0 | binaryVennNode.offset(92.0d, 124.0d); |
| 324 | 0 | for (PNode node : binaryVennNode.nodes()) |
| 325 | |
{ |
| 326 | 0 | node.addInputEventListener(new ToolTipTextListener()); |
| 327 | 0 | node.addInputEventListener(new MousePressedListener()); |
| 328 | |
} |
| 329 | 0 | canvas.getLayer().addChild(binaryVennNode); |
| 330 | 0 | } |
| 331 | |
|
| 332 | |
|
| 333 | |
|
| 334 | |
|
| 335 | |
|
| 336 | |
|
| 337 | |
DiagramView(final TernaryVennNode<CyNode> ternaryVennNode) |
| 338 | |
{ |
| 339 | 0 | this(); |
| 340 | 0 | ternaryVennNode.offset(92.0d, 70.0d); |
| 341 | 0 | for (PNode node : ternaryVennNode.nodes()) |
| 342 | |
{ |
| 343 | 0 | node.addInputEventListener(new ToolTipTextListener()); |
| 344 | 0 | node.addInputEventListener(new MousePressedListener()); |
| 345 | |
} |
| 346 | 0 | canvas.getLayer().addChild(ternaryVennNode); |
| 347 | 0 | } |
| 348 | |
|
| 349 | |
|
| 350 | |
|
| 351 | |
|
| 352 | |
|
| 353 | |
|
| 354 | |
DiagramView(final QuaternaryVennNode<CyNode> quaternaryVennNode) |
| 355 | |
{ |
| 356 | 0 | this(); |
| 357 | 0 | quaternaryVennNode.offset(40.0d, 235.0d); |
| 358 | 0 | for (PNode node : quaternaryVennNode.nodes()) |
| 359 | |
{ |
| 360 | 0 | node.addInputEventListener(new ToolTipTextListener()); |
| 361 | 0 | node.addInputEventListener(new MousePressedListener()); |
| 362 | |
} |
| 363 | 0 | canvas.getLayer().addChild(quaternaryVennNode); |
| 364 | 0 | } |
| 365 | |
|
| 366 | |
|
| 367 | |
|
| 368 | |
|
| 369 | |
|
| 370 | |
|
| 371 | |
DiagramView(final VennNode<CyNode> vennNode) |
| 372 | |
{ |
| 373 | 0 | this(); |
| 374 | 0 | vennNode.offset(100.0d, 100.0d); |
| 375 | 0 | for (PNode node : vennNode.nodes()) |
| 376 | |
{ |
| 377 | 0 | node.addInputEventListener(new ToolTipTextListener()); |
| 378 | 0 | node.addInputEventListener(new MousePressedListener()); |
| 379 | |
} |
| 380 | 0 | canvas.getLayer().addChild(vennNode); |
| 381 | 0 | } |
| 382 | |
|
| 383 | |
|
| 384 | |
|
| 385 | |
|
| 386 | |
|
| 387 | |
|
| 388 | |
|
| 389 | |
|
| 390 | |
|
| 391 | |
private String getLabelTextForPickedNode(final PPickPath path) |
| 392 | |
{ |
| 393 | 0 | PNode pickedNode = path.getPickedNode(); |
| 394 | 0 | for (Iterator i = path.getNodeStackReference().iterator(); i.hasNext(); ) |
| 395 | |
{ |
| 396 | 0 | PNode node = (PNode) i.next(); |
| 397 | 0 | if (node instanceof AbstractVennNode) |
| 398 | |
{ |
| 399 | 0 | AbstractVennNode<CyNode> abstractVennNode = (AbstractVennNode<CyNode>) node; |
| 400 | 0 | String labelText = abstractVennNode.labelTextForNode(pickedNode); |
| 401 | 0 | if (labelText != null) |
| 402 | |
{ |
| 403 | 0 | return labelText; |
| 404 | |
} |
| 405 | |
} |
| 406 | 0 | } |
| 407 | 0 | return null; |
| 408 | |
} |
| 409 | |
|
| 410 | |
|
| 411 | |
|
| 412 | |
|
| 413 | |
|
| 414 | |
|
| 415 | |
|
| 416 | |
|
| 417 | |
private Set<CyNode> getViewForPickedNode(final PPickPath path) |
| 418 | |
{ |
| 419 | 0 | PNode pickedNode = path.getPickedNode(); |
| 420 | 0 | for (Iterator i = path.getNodeStackReference().iterator(); i.hasNext(); ) |
| 421 | |
{ |
| 422 | 0 | PNode node = (PNode) i.next(); |
| 423 | 0 | if (node instanceof AbstractVennNode) |
| 424 | |
{ |
| 425 | 0 | AbstractVennNode<CyNode> abstractVennNode = (AbstractVennNode<CyNode>) node; |
| 426 | 0 | Set<CyNode> view = abstractVennNode.viewForNode(pickedNode); |
| 427 | 0 | if (view != null) |
| 428 | |
{ |
| 429 | 0 | return view; |
| 430 | |
} |
| 431 | |
} |
| 432 | 0 | } |
| 433 | 0 | return null; |
| 434 | |
} |
| 435 | |
|
| 436 | |
|
| 437 | |
|
| 438 | |
|
| 439 | |
private void exportToPNG() |
| 440 | |
{ |
| 441 | 0 | Image image = canvas.getLayer().toImage(); |
| 442 | |
|
| 443 | 0 | FileDialog fileDialog = new FileDialog((Dialog) windowForComponent(this), "Export to PNG...", FileDialog.SAVE); |
| 444 | 0 | fileDialog.setVisible(true); |
| 445 | |
|
| 446 | 0 | String directory = fileDialog.getDirectory(); |
| 447 | 0 | String fileName = fileDialog.getFile(); |
| 448 | |
|
| 449 | 0 | if (fileName != null && directory != null) |
| 450 | |
{ |
| 451 | |
try |
| 452 | |
{ |
| 453 | 0 | ImageIO.write((RenderedImage) image, "png", new File(directory, fileName)); |
| 454 | |
} |
| 455 | 0 | catch (IOException e) |
| 456 | |
{ |
| 457 | |
|
| 458 | 0 | } |
| 459 | |
} |
| 460 | 0 | } |
| 461 | |
|
| 462 | |
|
| 463 | |
|
| 464 | |
|
| 465 | |
private void exportToSVG() |
| 466 | |
{ |
| 467 | |
|
| 468 | 0 | FileDialog fileDialog = new FileDialog((Dialog) windowForComponent(this), "Export to SVG...", FileDialog.SAVE); |
| 469 | 0 | fileDialog.setVisible(true); |
| 470 | |
|
| 471 | 0 | String directory = fileDialog.getDirectory(); |
| 472 | 0 | String fileName = fileDialog.getFile(); |
| 473 | |
|
| 474 | 0 | if (fileName != null && directory != null) |
| 475 | |
{ |
| 476 | 0 | FileWriter writer = null; |
| 477 | |
try |
| 478 | |
{ |
| 479 | 0 | writer = new FileWriter(new File(directory, fileName)); |
| 480 | 0 | DOMImplementation domImpl = GenericDOMImplementation.getDOMImplementation(); |
| 481 | 0 | Document document = domImpl.createDocument(SVG_NS, "svg", null); |
| 482 | 0 | SVGGraphics2D svgGenerator = new SVGGraphics2D(document); |
| 483 | 0 | canvas.paint(svgGenerator); |
| 484 | 0 | svgGenerator.stream(writer, true); |
| 485 | |
} |
| 486 | 0 | catch (IOException e) |
| 487 | |
{ |
| 488 | |
|
| 489 | |
} |
| 490 | |
finally |
| 491 | |
{ |
| 492 | 0 | try |
| 493 | |
{ |
| 494 | 0 | writer.close(); |
| 495 | |
} |
| 496 | 0 | catch (Exception e) |
| 497 | |
{ |
| 498 | |
|
| 499 | 0 | } |
| 500 | 0 | } |
| 501 | |
} |
| 502 | 0 | } |
| 503 | |
|
| 504 | |
|
| 505 | |
|
| 506 | |
|
| 507 | |
|
| 508 | |
|
| 509 | |
private void displayLabels(final boolean displayLabels) |
| 510 | |
{ |
| 511 | 0 | for (Iterator i = canvas.getLayer().getChildrenIterator(); i.hasNext(); ) |
| 512 | |
{ |
| 513 | 0 | PNode node = (PNode) i.next(); |
| 514 | 0 | if (node instanceof AbstractVennNode) |
| 515 | |
{ |
| 516 | 0 | AbstractVennNode<CyNode> vennNode = (AbstractVennNode<CyNode>) node; |
| 517 | 0 | vennNode.setDisplayLabels(displayLabels); |
| 518 | |
} |
| 519 | 0 | } |
| 520 | 0 | } |
| 521 | |
|
| 522 | |
|
| 523 | |
|
| 524 | |
|
| 525 | |
|
| 526 | |
|
| 527 | |
private void displaySizes(final boolean displaySizes) |
| 528 | |
{ |
| 529 | 0 | for (Iterator i = canvas.getLayer().getChildrenIterator(); i.hasNext(); ) |
| 530 | |
{ |
| 531 | 0 | PNode node = (PNode) i.next(); |
| 532 | 0 | if (node instanceof AbstractVennNode) |
| 533 | |
{ |
| 534 | 0 | AbstractVennNode<CyNode> vennNode = (AbstractVennNode<CyNode>) node; |
| 535 | 0 | vennNode.setDisplaySizes(displaySizes); |
| 536 | |
} |
| 537 | 0 | } |
| 538 | 0 | } |
| 539 | |
|
| 540 | |
|
| 541 | |
|
| 542 | |
|
| 543 | |
|
| 544 | |
|
| 545 | |
private void displaySizeLabels(final boolean displaySizeLabels) |
| 546 | |
{ |
| 547 | 0 | for (Iterator i = canvas.getLayer().getChildrenIterator(); i.hasNext(); ) |
| 548 | |
{ |
| 549 | 0 | PNode node = (PNode) i.next(); |
| 550 | 0 | if (node instanceof AbstractVennNode) |
| 551 | |
{ |
| 552 | 0 | AbstractVennNode<CyNode> vennNode = (AbstractVennNode<CyNode>) node; |
| 553 | 0 | vennNode.setDisplaySizeLabels(displaySizeLabels); |
| 554 | |
} |
| 555 | 0 | } |
| 556 | 0 | } |
| 557 | |
|
| 558 | |
|
| 559 | |
|
| 560 | |
|
| 561 | |
|
| 562 | |
|
| 563 | |
private void displaySizesForEmptyAreas(final boolean displaySizesForEmptyAreas) |
| 564 | |
{ |
| 565 | 0 | for (Iterator i = canvas.getLayer().getChildrenIterator(); i.hasNext(); ) |
| 566 | |
{ |
| 567 | 0 | PNode node = (PNode) i.next(); |
| 568 | 0 | if (node instanceof AbstractVennNode) |
| 569 | |
{ |
| 570 | 0 | AbstractVennNode<CyNode> vennNode = (AbstractVennNode<CyNode>) node; |
| 571 | 0 | vennNode.setDisplaySizesForEmptyAreas(displaySizesForEmptyAreas); |
| 572 | |
} |
| 573 | 0 | } |
| 574 | 0 | } |
| 575 | |
|
| 576 | |
|
| 577 | |
|
| 578 | |
|
| 579 | |
private void selectAll() |
| 580 | |
{ |
| 581 | 0 | CyNetwork currentNetwork = Cytoscape.getCurrentNetwork(); |
| 582 | 0 | for (Iterator i = canvas.getLayer().getChildrenIterator(); i.hasNext(); ) |
| 583 | |
{ |
| 584 | 0 | PNode node = (PNode) i.next(); |
| 585 | |
|
| 586 | 0 | if (node instanceof BinaryVennNode) |
| 587 | |
{ |
| 588 | 0 | BinaryVennNode<CyNode> binaryVennNode = (BinaryVennNode<CyNode>) node; |
| 589 | 0 | currentNetwork.unselectAllNodes(); |
| 590 | 0 | currentNetwork.setSelectedNodeState(binaryVennNode.getModel().union(), true); |
| 591 | 0 | } |
| 592 | 0 | else if (node instanceof TernaryVennNode) |
| 593 | |
{ |
| 594 | 0 | TernaryVennNode<CyNode> ternaryVennNode = (TernaryVennNode<CyNode>) node; |
| 595 | 0 | currentNetwork.unselectAllNodes(); |
| 596 | 0 | currentNetwork.setSelectedNodeState(ternaryVennNode.getModel().union(), true); |
| 597 | 0 | } |
| 598 | 0 | else if (node instanceof QuaternaryVennNode) |
| 599 | |
{ |
| 600 | 0 | QuaternaryVennNode<CyNode> quaternaryVennNode = (QuaternaryVennNode<CyNode>) node; |
| 601 | 0 | currentNetwork.unselectAllNodes(); |
| 602 | 0 | currentNetwork.setSelectedNodeState(quaternaryVennNode.getModel().union(), true); |
| 603 | 0 | } |
| 604 | 0 | else if (node instanceof VennNode) |
| 605 | |
{ |
| 606 | 0 | VennNode<CyNode> vennNode = (VennNode<CyNode>) node; |
| 607 | 0 | currentNetwork.unselectAllNodes(); |
| 608 | 0 | currentNetwork.setSelectedNodeState(vennNode.getModel().union(), true); |
| 609 | |
} |
| 610 | 0 | } |
| 611 | 0 | Cytoscape.getCurrentNetworkView().updateView(); |
| 612 | 0 | } |
| 613 | |
|
| 614 | |
|
| 615 | |
|
| 616 | |
|
| 617 | |
private void clearSelection() |
| 618 | |
{ |
| 619 | 0 | CyNetwork currentNetwork = Cytoscape.getCurrentNetwork(); |
| 620 | 0 | currentNetwork.unselectAllNodes(); |
| 621 | 0 | Cytoscape.getCurrentNetworkView().updateView(); |
| 622 | 0 | } |
| 623 | |
|
| 624 | |
|
| 625 | |
|
| 626 | |
|
| 627 | |
private void zoomIn() |
| 628 | |
{ |
| 629 | 0 | PCamera camera = canvas.getCamera(); |
| 630 | 0 | double scale = 1.0d + 4.0d * SCALE_FACTOR; |
| 631 | |
|
| 632 | 0 | Point2D center = camera.getBoundsReference().getCenter2D(); |
| 633 | 0 | camera.scaleViewAboutPoint(scale, center.getX(), center.getY()); |
| 634 | 0 | } |
| 635 | |
|
| 636 | |
|
| 637 | |
|
| 638 | |
|
| 639 | |
private void zoomOut() |
| 640 | |
{ |
| 641 | 0 | PCamera camera = canvas.getCamera(); |
| 642 | 0 | double scale = 1.0d - 2.0d * SCALE_FACTOR; |
| 643 | |
|
| 644 | 0 | Point2D center = camera.getBoundsReference().getCenter2D(); |
| 645 | 0 | camera.scaleViewAboutPoint(scale, center.getX(), center.getY()); |
| 646 | 0 | } |
| 647 | |
|
| 648 | |
|
| 649 | |
|
| 650 | |
|
| 651 | |
private class ToolTipTextListener |
| 652 | |
extends PBasicInputEventHandler |
| 653 | |
{ |
| 654 | |
|
| 655 | |
|
| 656 | |
|
| 657 | |
|
| 658 | |
ToolTipTextListener() |
| 659 | 0 | { |
| 660 | 0 | super(); |
| 661 | 0 | PInputEventFilter eventFilter = new PInputEventFilter(); |
| 662 | 0 | eventFilter.rejectAllEventTypes(); |
| 663 | 0 | eventFilter.setAcceptsMouseEntered(true); |
| 664 | 0 | eventFilter.setAcceptsMouseExited(true); |
| 665 | 0 | setEventFilter(eventFilter); |
| 666 | 0 | } |
| 667 | |
|
| 668 | |
|
| 669 | |
public void mouseEntered(final PInputEvent event) |
| 670 | |
{ |
| 671 | 0 | PCanvas canvas = (PCanvas) event.getComponent(); |
| 672 | 0 | canvas.setToolTipText(getLabelTextForPickedNode(event.getPath())); |
| 673 | 0 | } |
| 674 | |
|
| 675 | |
|
| 676 | |
public void mouseExited(final PInputEvent event) |
| 677 | |
{ |
| 678 | 0 | PCanvas canvas = (PCanvas) event.getComponent(); |
| 679 | 0 | canvas.setToolTipText(null); |
| 680 | 0 | } |
| 681 | |
} |
| 682 | |
|
| 683 | |
|
| 684 | |
|
| 685 | |
|
| 686 | |
private class MousePressedListener |
| 687 | |
extends PBasicInputEventHandler |
| 688 | |
{ |
| 689 | |
|
| 690 | |
|
| 691 | |
|
| 692 | |
|
| 693 | |
MousePressedListener() |
| 694 | 0 | { |
| 695 | 0 | super(); |
| 696 | 0 | PInputEventFilter eventFilter = new PInputEventFilter(); |
| 697 | 0 | eventFilter.rejectAllEventTypes(); |
| 698 | 0 | eventFilter.setAcceptsMousePressed(true); |
| 699 | 0 | eventFilter.setAcceptsMouseReleased(true); |
| 700 | 0 | eventFilter.setAndMask(InputEvent.BUTTON1_MASK); |
| 701 | 0 | setEventFilter(eventFilter); |
| 702 | 0 | } |
| 703 | |
|
| 704 | |
|
| 705 | |
|
| 706 | |
public void mousePressed(final PInputEvent event) |
| 707 | |
{ |
| 708 | 0 | if (Mode.PAN == mode) |
| 709 | |
{ |
| 710 | 0 | return; |
| 711 | |
} |
| 712 | 0 | PNode pickedNode = event.getPickedNode(); |
| 713 | 0 | pickedNode.setPaint(AREA_PRESSED_PAINT); |
| 714 | |
|
| 715 | 0 | Set<CyNode> selection = getViewForPickedNode(event.getPath()); |
| 716 | 0 | if (selection != null) |
| 717 | |
{ |
| 718 | 0 | CyNetwork currentNetwork = Cytoscape.getCurrentNetwork(); |
| 719 | 0 | currentNetwork.unselectAllNodes(); |
| 720 | 0 | currentNetwork.setSelectedNodeState(selection, true); |
| 721 | 0 | Cytoscape.getCurrentNetworkView().updateView(); |
| 722 | |
} |
| 723 | 0 | } |
| 724 | |
|
| 725 | |
|
| 726 | |
public void mouseReleased(final PInputEvent event) |
| 727 | |
{ |
| 728 | 0 | if (Mode.PAN == mode) |
| 729 | |
{ |
| 730 | 0 | return; |
| 731 | |
} |
| 732 | 0 | PNode pickedNode = event.getPickedNode(); |
| 733 | 0 | pickedNode.animateToColor(AREA_COLOR, 250L); |
| 734 | 0 | } |
| 735 | |
} |
| 736 | |
|
| 737 | |
|
| 738 | |
|
| 739 | |
|
| 740 | 0 | private class ModeEventHandler |
| 741 | |
extends KeyAdapter |
| 742 | |
{ |
| 743 | |
|
| 744 | |
|
| 745 | |
public void keyPressed(final KeyEvent event) |
| 746 | |
{ |
| 747 | 0 | if (KeyEvent.VK_SPACE == event.getKeyCode()) |
| 748 | |
{ |
| 749 | 0 | mode = Mode.PAN; |
| 750 | 0 | ((PCanvas) event.getComponent()).setCursor(Cursor.getPredefinedCursor(Cursor.MOVE_CURSOR)); |
| 751 | |
} |
| 752 | 0 | } |
| 753 | |
|
| 754 | |
|
| 755 | |
public void keyReleased(final KeyEvent event) |
| 756 | |
{ |
| 757 | 0 | if (KeyEvent.VK_SPACE == event.getKeyCode()) |
| 758 | |
{ |
| 759 | 0 | mode = Mode.EDIT; |
| 760 | 0 | ((PCanvas) event.getComponent()).setCursor(Cursor.getDefaultCursor()); |
| 761 | |
} |
| 762 | 0 | } |
| 763 | |
} |
| 764 | |
|
| 765 | |
|
| 766 | |
|
| 767 | |
|
| 768 | |
private class PanEventHandler |
| 769 | |
extends PPanEventHandler |
| 770 | |
{ |
| 771 | |
|
| 772 | |
|
| 773 | |
|
| 774 | |
|
| 775 | |
PanEventHandler() |
| 776 | 0 | { |
| 777 | 0 | super(); |
| 778 | |
|
| 779 | |
|
| 780 | 0 | setEventFilter(new PInputEventFilter(InputEvent.BUTTON1_MASK) |
| 781 | 0 | { |
| 782 | |
|
| 783 | |
public boolean acceptsEvent(final PInputEvent event, final int type) |
| 784 | |
{ |
| 785 | 0 | return super.acceptsEvent(event, type) && (Mode.PAN == mode); |
| 786 | |
} |
| 787 | |
}); |
| 788 | 0 | } |
| 789 | |
} |
| 790 | |
} |